Taxonomic Swap 43641 (Tehty 17-01-2019)

Genetics show the San Bernadino squirrels should be a subspecies of the newly recognized G. oregonensis.

Genetic data reveal a cryptic species... (Viittaus)
Lisännyt jwidness marraskuu 29, 2018 04:15 AP. | Tallentanut jwidness tammikuu 17, 2019
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@loarie this seems like a pretty straightforward swap

Lähettänyt jwidness yli 5 vuotta sitten

Quoting from Arbogast 2017:

The mtDNA control region sequence data presented here show that although flying squirrels from California are part of the Pacific Coastal mtDNA clade (i.e., G. oregonensis), they are notably divergent from the non-California members of the PC clade.
Our proposed taxonomic change affects subspecies nomenclature in the following ways: 5 subspecies (G. s. californicus, G. s. lascivus, G. s. stephensi, G. s. flaviventris, and G. s. klamathensis) would clearly fall under G. oregonensis and would therefore require the requisite taxonomic change.

Lähettänyt jwidness yli 5 vuotta sitten

@jwidness there is a taxon framework for mammals that only extends down to species. Since this only involves ssp you should be able to make this swap correct? Before taxon frameworks 'complete taxa' always went down to ssp so this wouldn't have worked then, but the new system should accomodate this unless there's a bug

Also let me know if you want to help curate the mammal taxonomy covered by the framework - right now its using IUCN GMA - not sure if folks are still advocating moving to ASM

Lähettänyt loarie yli 5 vuotta sitten

@loarie I'm getting the message:
Heads up: One or both of the input taxa involved in this change are within a taxon framework Only site admins or curators of that taxon framework can commit changes affecting covered taxa.

I assume this is because the swap moves the subspecies from one species epithet to a different one, so technically involves a change at the species level.

I'd be happy to help curate mammal taxonomy.

Lähettänyt jwidness yli 5 vuotta sitten

hmm - that should be allowed so this is a bug. Let me look into this

Lähettänyt loarie yli 5 vuotta sitten

I was able to add the subspecies G. o. californicus, I just couldn't swap it for G. s. californicus.

Lähettänyt jwidness yli 5 vuotta sitten

@loarie any progress on this bug?

Lähettänyt jwidness yli 5 vuotta sitten

@loarie I still don't have an option to commit this, so I'm assuming the bug is still there and I'm not a curator for mammals yet?

Lähettänyt jwidness yli 5 vuotta sitten

working on this but not done - thanks for your patience

Lähettänyt loarie yli 5 vuotta sitten

No problem, sorry to keep bothering you.

Lähettänyt jwidness yli 5 vuotta sitten

@jwidness - this should be fixed. (e.g. iNat should realize that Glaucomys oregonensis californicus is not covered by a curated taxon framework and therefore not protected) Can you try committing this?

Lähettänyt loarie yli 5 vuotta sitten

The commit worked -- i.e. G. o. californicus replaced G. s. californicus (which is now inactive), but I'm not seeing IDs auto-updated. Not sure if I did something wrong or I just need to wait?

Lähettänyt jwidness yli 5 vuotta sitten

prob just need to wait

Lähettänyt loarie yli 5 vuotta sitten

Yep, I checked back seconds before the outage and it was updated, but I couldn't get a comment in before it went down.

Lähettänyt jwidness yli 5 vuotta sitten

cool!

Lähettänyt loarie yli 5 vuotta sitten

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